_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 5e-43
 Query name: gi|589268210|emb|CCG28024.1| glutathione peroxidase 4b [Oncorhynchus mykiss]
 Query range: 1-191  (total 191)

 Target: /data/www-rg/seblastian_results/531773595/tempfiles/temptarget.fasta
 Chromosome: CM007942.1:subseq_71312515,100810_ Strand: +
 Positions:
 -Exon 1  44720        44785
 -Exon 2  49814        49908
 -Exon 3  50002        50146
 -Exon 4  50326        50477
 -Exon 5  50616        50640
 -Exon 6  50748        50807
 -Exon 7  54047        54076

 Redox box: no

Query   MWIVTRGLVFGLLGSSGVGRAM <---Intron---> CAQVGDWKTAKYIYEFGAKDIDGEDVALEKYR <---Intron---> GFVCIITNVASKUG
        |||||||||||||||||||||| <   5028bp   > |||||||||||||||||||||||||||||||| <    93bp    > ||||||||||||||
Target  MWIVTRGLVFGLLGSSGVGRAM                CAQVGDWKTAKYIYEFGAKDIDGEDVALEKYR                GFVCIITNVASKUG
        atagacgtgtgtcgaagggaga                tgcgggtaagatatgtggagaggggggcgata                gtgtaaaaggtatg
        tgttcggtttgttggggtggct                gcatgagaccaataatgcaatagaatctaaag                gttgttcatccagg
        ggcagtgatttggcctactaag                tgagtcggacatctgttcgcattatgcagac                ggtcccccctctaat
                                                                                                          * 

Query   KTRVNYTQLAGMHASYADKGLRILGFPCNQFGGQ <---Intron---> EPGTEVEIKEFVKQFDVQFDMFSKIDVNGDGAHPLFKWMKEQPKGKGTLG
        |||||||||||||||||||||||||||||||||| <   179bp    > ||||||||||||||||||||||||||||||||||||||||||||||||||
Target  KTRVNYTQLAGMHASYADKGLRILGFPCNQFGGQ                EPGTEVEIKEFVKQFDVQFDMFSKIDVNGDGAHPLFKWMKEQPKGKGTLG
        aaagataccggacgttggagtcacgtctactggc                gcgagggaagtgactggctgataaaggaggggccctataagccagagacg
        acgtaacatcgtaccacaagtgttgtcgaatgga                acgcatataattaatatatattgatatagagcacttagtaaacagagctg
        gcgacctgagagcccctcataccgcccccgtatg                gataggacggtcaatctgtcgccgtcgcacctctctggggagcgagttga
                                                                                                            

Query   N <---Intron---> NIKWNFTK <---Intron---> FLINREGQVVKRYGPMDDPI <---Intron---> VIEKDLPKYL
        | <   138bp    > |||||||| <   107bp    > |||||||||||||||||||| <   3239bp   > ||||||||||
Target  N                NIKWNFTK                FLINREGQVVKRYGPMDDPI                VIEKDLPKYL
        a                aaatataa                tcaaaggcggaatgcaggca                gagagccatc
        a                atagatca                tttagagattagagctaact                ttaaatcaat
                        tccagtcag                cgccaagggggacgagtcct                gcggcttacg
                                                                                               
 Sequence until next stop: 
TGA
 * 

 Distance CDS-SECIS: 73 ; UGA-SECIS: 445

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = CM007942.1:subseq_71312515,100810_ Strand = + Positions = 54150 - 54227
 Found by:  Infernal (score=35.3) Covels (score=36.55)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -19.59

         ..(((((((.......(((((((((((((((................))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .((((({((((.....{[[{((((((((([(................)])))))))))}]]}.....-)-)))}))))).
 target  CUGUGUCCUGGACCAGUGACGGCCUGUCUGUAAACCCGGCCUGCGGAGAGGACAGGCCUGAUGAAAC-C-UAGCGUGCAA
                         ****           ^^^                        ****